Introduction to documents:
1. You can input the sequence pair to be predicted in the text box, or you can upload a compressed zip file containing the sequence pair to be predicted.
2. The compressed zip file should contain two fasta files of sequence pairs. The first sequence is named "first.fasta", and the second sequence is named "second.fasta".
3. The sequence in the text box or the ".fasta" file in compressed zip file should be in standard fasta format. A sequence in FASTA format consists of two parts: 1. Start symbol: ">"; 2. The sequence itself. For example:
>chr1:150-192
GACTCCCGCTGCGGTCCCGAGAGGGCGGCTAGGGACGCGGAG
4. You should first select the cell line and the orientation of sequence pair before submitting your job, which is to make the prediction more accurate.
5. Click 'Download', the page will jump to github containing the source code.
6. If you want to quickly verify the webserver of CLNN-loop, you can click "Fast Test". This will predict five sequence pairs from the MCF-7 cell line, of which the orientation of the first sequence is forward and the orientation of the second sequence is reverse.
Download Test Example.
The error types is as follows:
1. The cell line not selected. You should select the cell line of sequence pair.
2. The orientation of the first sequence not selected. You should select the orientation of first sequence.
3. The orientation of the second sequence not selected. You should select the orientation of second sequence.
4. E-mail can not be empty. You should input your email address.
5. Email format error. You should input the correct email address.
6. Please input the sequence or upload a ZIP file. You should input the sequence pair to be predicted in the text box, or you can upload a compressed zip file containing the sequence pair to be predicted.
7. Please upload a ZIP file. You should upload a correct format file (.zip).
If you have any questions, please contact us: [email protected].